There are 401 articles for you to read.

Using vrap and bacto to process Acinetobacter baumannii isolates

Author: gene_x

Abstract: 1. input data #Deciphering Evolutionary Trajectories in Acinetobacter baumannii: A Comparative Study of Isolates ATCC 19606, AYE, and ATCC 17978 #PRJNA1041744

How to run the pipeline vrap?

Author: gene_x

Abstract: 1. download viral database cp download_db.py down_db.py.backup sed -i -e 's/39733/1396/g' download_db.py #NOTE the download_db.py cannot run alone, rather than via "vrap.py -u

A decade of advances in transposon-insertion sequencing

Author: gene_x

Abstract: 摘要 自现代转座子插入测序(TIS)方法引入以来已有10年的时间了。这些方法结合了全基因组转座子突变和高通量测序,用于估计细菌基因组中每个遗传组分的适应性贡献或必需性。2009年,发布了四种TIS变体:转座子测序(Tn-Seq)、转座子定向插入位点测序(TraDIS)、插入测序(INSeq)和高通量插入跟踪深度测序(HITS)。此后,TIS已成为分子微生物学家的重要工具之一,它是少数直接将表

Calling peaks using findPeaks of HOMER

Author: gene_x

Abstract: > https://fonseca.lab.mcgill.ca/resources/20220810_ATAC_Analysis_Demo/guide.html#peaks [![peak-comparison](/static/peaks_and_motifs_in_promoters/peak-comparison.png "peak-comparison")](/static/peaks_

Scaffolding and finishing an assembly with a reference genome

Author: gene_x

Abstract: Below are example commands for each step of scaffolding and finishing an assembly with a reference genome. Please note that the specific parameters may need to be adjusted based on your data and compu

Plasmid Design for Genetic Engineering

Author: gene_x

Abstract: Plasmid design is a critical aspect of molecular biology and genetic engineering, where a circular DNA molecule (plasmid) is engineered to replicate within a host organism independently. Here's an ove

LT manuscript TODOs

Author: gene_x

Abstract: 1. Define "promoter types" by examining the frequency and distribution of the 'GRGGC' motif on both + and - strands within the promoter region, and categorize promoters based on the identified "promot

Transposable element (TEs) and structural variant (SV) detection in bacterial genomes

Author: gene_x

Abstract: For a bacterial genome such as Acinetobacter baumannii, the pipeline would be slightly different than the one used for the human due to the simpler genome structure, the absence of introns, and the di

Genomic Organization of Merkel cell polyomavirus (MCPyV)

Author: gene_x

Abstract: Based on the provided image of the MCPyV (Merkel cell polyomavirus) genome, it appears that ALTO is positioned between the LT (Large T antigen) and sT (small T antigen) regions. However, it's not enti

炎症体:先天免疫与细胞自主免疫交汇的关键节点

Author: gene_x

Abstract: Inflammasomes at the crossroads of innate and cell-autonomous immunity 炎症体位于先天免疫和细胞自主免疫的交汇点,其在我们体内的免疫防御中发挥着重要作用。 先天免疫是我们身体对抗病原体(如细菌、病毒和其他有害微生物)的第一道防线。它包括一系列的防御机制,如皮肤、粘液层和吞噬细胞等,这些机制可以迅速识别和消灭入侵者。 细胞自


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