Proteins

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This category contains websites related to Proteins.

Proteins

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http://www.expasy.ch/prosite/

Prosite - Database of protein families and domains.

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http://bioinformatics.weizmann.ac.il/hydroph/

Protein Hydrophilicity/Hydrophobicity Search and Comparison Server

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http://biology.ncsa.uiuc.edu/

The Biology WorkBench is a revolutionary web-based tool for biologists. The WorkBench allows biologists to search many popular protein and nucleic acid sequence databases.

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http://biomint.pharmadm.com/

GPSDB (Gene and Protein Synonyms Database) is a collection of gene and protein names, organized by species. This free thesaurus allows to query PubMed directly for related literature.

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http://cbrg.inf.ethz.ch/Server/AllAll.html

AllAll: Related peptide sequences. Starting from a set of related peptides, the AllAll command determines the relationship of each peptide sequence versus the others(all-against-all matching) and uses these results to construct phylogenetic trees.

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http://cubic.bioc.columbia.edu/predictprotein/

PredictProtein is a service for sequence analysis, and structure prediction.

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http://dip.doe-mbi.ucla.edu/

DIP (Database of Interacting Proteins) is a database of protein pairs that are known to interact with each other.

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http://genome.nhgri.nih.gov/histones/

Histone Sequence Database

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http://genomic.sanger.ac.uk/db.shtml

INFOGENE - DataBases of Genome known and Predicted Genes and Proteins

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http://imgt.cines.fr:8104/

IMGT, the international ImMunoGeneTics database, is a high-quality integrated database specialising in Immunoglobulins, T cell receptors and Major Histocompatibility Complex molecules of all vertebrate species, created in 1989 by Marie-Paule Lefranc.

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http://mips.gsf.de/

munich information center for protein sequences

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http://pfam.wustl.edu/

Pfam (Protein families database of alignments and HMMs) is a large collection of multiple sequence alignments

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http://pir.georgetown.edu/gfserver/Welcome.html

The GeneFIND Web Server provides on-line family identification of query sequences and keyword search for information retrieval of protein families.

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http://pir.georgetown.edu/pir/

The Protein Information Resource (PIR) maintains the International Protein Sequence Database.

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http://protein.toulouse.inra.fr/prodom.html

The ProDom protein domain database consists of an automatic compilation of homologous domains.

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http://scop.berkeley.edu/

SCOP - Structural Classification of Proteins.

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http://searchlauncher.bcm.tmc.edu/seq-search/protein-search-genomes.html

BCM Search Launcher: Species-Specific Protein Sequence Searches.

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http://searchlauncher.bcm.tmc.edu/seq-search/protein-search.html

BCM Search Launcher: General Protein Sequence/Pattern Searches: Blastp, Fasta, Prosite, Blocks, Swissprot etc.

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http://systers.molgen.mpg.de/

The SYSTERS protein sequence cluster set consists of the classification of all sequences from SWISS-PROT and PIR into disjoint protein family clusters and hierarchically into superfamily and subfamily clusters.

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http://www-cryst.bioc.cam.ac.uk/~homstrad/

HOMSTRAD - a database of protein structure alignments of homologous families.

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http://www-cryst.bioc.cam.ac.uk/~sloop/

SLoop - A Database of Super Secondary Fragments.

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http://www.biochem.ucl.ac.uk/bsm/cath/

CATH - The CATH database is a hierarchical domain classification of protein structures in the Brookhaven protein databank.

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http://www.cbs.dtu.dk/services/

Prediction servers - Center for Biological Sequence Analysis

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http://www.copewithcytokines.de/

COPE - Cytokines Online Pathfinder Encyclopaedia.

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http://www.embl-heidelberg.de/srs5/

Sequence Retrieval System - Network Browser for Databanks in Molecular Biology.

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