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This category contains websites related to Evolution and Phylogeny.

Evolution and Phylogeny
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Origin of life Origin of life
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http://compare.bio.indiana.edu/

Compare - for the phylogenetic analysis of comparative data.

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http://bioinf.may.ie/software/

This directory contains software for inference of evolutionary history using molecular sequence data, including programs for parallelisation of maximum likelihood problems, construction of phylogenetic supertrees, analysing codon usage data and identifyin

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http://bioweb.pasteur.fr/seqanal/phylogeny/phylip-uk.html

Webinterface for Phylip programs.

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http://evolution.genetics.washington.edu/phylip.html

PHYLIP Home Page - Phylogenieprogramm

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http://evolution.genetics.washington.edu/phylip/software.xref.html

Phylogeny programs cross-referenced by method and system.

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http://evolve.zoo.ox.ac.uk/

Software from Evolutionary Biology, Molecular Phylogenetics and Epidemiology, Department of Zoology, Oxford.

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http://fasta.bioch.virginia.edu/seqevolver/

SeqEvolver simulates the evolution of a collection of protein or DNA sequences, with user-defined substitution rates and evolution time.

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http://lslwww.epfl.ch/~moshes/cp.html

Evolution of Parallel Cellular Machines.

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http://www-ab.informatik.uni-tuebingen.de/software/splits/welcome_en.html

SplitsTree: Analyzing and Visualizing Evolutionary Data

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http://www.bio.psu.edu/People/Faculty/Nei/Lab/Programs.html

Molecular Evolutionary Computer Programs distributed from Dr. Masatoshi Nei's Lab.

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http://www.bioinf.org/molsys/index.html

Molecular Systematics and Evolution Course. The Natural History Museum, London, and NUI Maynooth, Ireland.

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http://www.geocities.com/RainForest/Vines/8695/

Digital Taxonomy - An Information Resource on Biodiversity Data Management.

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http://www.is.titech.ac.jp/~shimo/prog/consel/

CONSEL: a program for assessing the confidence of phylogenetic tree selection.

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http://www.ncbi.nlm.nih.gov/COG/

NCBI's Clusters of Orthologous Groups (COGs) were delineated by comparing protein sequences encoded in 8 complete genomes,representing 6 major phylogenetic lineages.

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http://www.pal-project.org/

PAL: A Java library for molecular evolution and phylogenetics.

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http://www.tree-puzzle.de/

The PUZZLE Software: Maximum likelihood analysis for nucleotide, amino acid, and two-state data.

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http://www.treefinder.de

TREEFINDER computes phylogenetic trees from DNA sequences. A very fast maximum likelihood program by Gangolf Jobb.

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http://www.ucmp.berkeley.edu/subway/phylogen.html

Phylogenetics Resources - list of sites useful for scientists in this field.

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